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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34241965_34243571_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34241965 - 34243571
Intron Length:
1607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
GTTATATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTGTGTTATAT
Flanking Amino Acid:
GEKNPDNEFANMWIERTIYV
Intron Amino Acid Position:
1456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.6
34.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
80.5
0.69
0.9
73.9
40.6
Minor 5ss
32.6
-2
3
40.7
45.3
Minor BPS
46.1
-0.2
2.4
72.21
44.9

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069