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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34247302_34248324_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34247302 - 34248324
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATAA
5'SS Class:
major
3'SS Sequence:
CTCTCTTGACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTTCTGAAAT
Flanking Amino Acid:
VMGGFTNYEKAFFNEKYMHE
Intron Amino Acid Position:
1544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
73.9
32.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
66.8
0.38
1
62.1
38.6
Minor 5ss
42.8
-0.8
2.9
56
48.2
Minor BPS
68.6
0.66
1.5
84.64
35

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069