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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34253300_34255636_F

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34253300 - 34255636
Intron Length:
2337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GATTCTTTTATT
Flanking Amino Acid:
VEKQYGVRAVPSSLDDRRGS
Intron Amino Acid Position:
1618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.3
0.8
0.7
81.7
28.6
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
64.5
0.54
1.6
77.58
39.2

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069