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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34255783_34259760_F

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34255783 - 34259760
Intron Length:
3978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CAATTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTGATCT
Flanking Amino Acid:
DSTPSRPGSDGFVLEPLLPK
Intron Amino Acid Position:
1666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74
38.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.4
0.48
0.8
70
35.9
Minor 5ss
29.2
-2.4
2.5
25.1
36.7
Minor BPS
56.6
0.29
1.9
81.91
39.4

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069