About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34265516_34269174_F

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34265516 - 34269174
Intron Length:
3659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
CTGGTTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
AGTTACTGAAGA
Flanking Amino Acid:
RTKLSFSIQSNLELNGMSSA
Intron Amino Acid Position:
1784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.9
39.9
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
77.1
0.61
0.9
71.5
38.3
Minor 5ss
42.4
-0.8
3.1
65
39.9
Minor BPS
50
-0
1.9
64.95
40.7

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069