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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34269321_34278550_F

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34269321 - 34278550
Intron Length:
9230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
CTGTTCAAAATT
Flanking Amino Acid:
PTTSPPAHQRHLPPPLPSKT
Intron Amino Acid Position:
1833

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.4
40.3
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
80.7
0.69
0.8
73.5
37.1
Minor 5ss
31
-2.2
2.9
34.5
41
Minor BPS
48.5
-0
1.9
67.62
44

Associated Gene:

Gene:
DOCK1
Ensembl Gene ID:
ENSAPLG00000010685
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011140
34021578 - 34278646
257069