About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34303212_34308080_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
34303212 - 34308080
Intron Length:
4869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGTC
5'SS Class:
major
3'SS Sequence:
ACATTTCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AACCTCTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
73.5
35.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78.8
0.65
0.9
69.9
40.7
Minor 5ss
39.7
-1.2
3.1
52.8
44.4
Minor BPS
60.9
0.42
1.4
70.25
40.1

Associated Gene:

Gene:
NPS
Ensembl Gene ID:
ENSAPLG00000029354
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046524
34303144 - 34313017
9874