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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34308155_34309361_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34308155 - 34309361
Intron Length:
1207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAT
Flanking Amino Acid:
MQLHQETECSSLCRLNLLFI
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.8
39.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.1
0.63
1
79.4
32.9
Minor 5ss
39.7
-1.2
3.4
55
49.2
Minor BPS
69
0.67
1.5
84.29
36.6

Associated Gene:

Gene:
NPS
Ensembl Gene ID:
ENSAPLG00000029354
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046524
34303144 - 34313017
9874