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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34309444_34311789_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34309444 - 34311789
Intron Length:
2346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTATTTAATT
Flanking Amino Acid:
CSGYPIVPSMSSNPFYLNCQ
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.5
41.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.3
0.93
0.7
89.8
25.3
Minor 5ss
36.1
-1.6
3
47.2
43.4
Minor BPS
74.3
0.84
1.3
87.25
31.8

Associated Gene:

Gene:
NPS
Ensembl Gene ID:
ENSAPLG00000029354
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046524
34303144 - 34313017
9874