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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34342626_34344048_F

Intron Information:

Intron Rank:
128523
Intron Class:
major
Intron Phase:
Intron Coordinates:
34342626 - 34344048
Intron Length:
1423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGGGA
5'SS Class:
major
3'SS Sequence:
TTATTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
57.5
41.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
85.6
0.8
0.7
85.1
29.4
Minor 5ss
26.9
-2.7
3.7
38.1
46.8
Minor BPS
56
0.27
1.9
75.39
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019228
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038404
34340941 - 34344086
3146