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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34394208_34396679_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34394208 - 34396679
Intron Length:
2472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTTATA
Flanking Amino Acid:
IGVYTWNAIGGFFTLIVMIL
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
81
0.7
0.8
73.9
41.1
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
55.7
0.17
1.9
73.48
37.7

Associated Gene:

Gene:
CLRN3
Ensembl Gene ID:
ENSAPLG00000023018
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035248
34392268 - 34402975
10708