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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34454434_34467689_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34454434 - 34467689
Intron Length:
13256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACAG
5'SS Class:
major
3'SS Sequence:
TCTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTATCTTACGC
Flanking Amino Acid:
HGGQGLPAPSRSRMEHPCSF
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
62.5
43.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
87.1
0.84
0.7
84.6
30.3
Minor 5ss
36.9
-1.5
3.1
47.4
48
Minor BPS
54.3
0.11
2
70.24
41.4

Associated Gene:

Gene:
PTPRE
Ensembl Gene ID:
ENSAPLG00000009861
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021567
34454363 - 34502285
47923