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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34467800_34474790_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34467800 - 34474790
Intron Length:
6991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGCCA
5'SS Class:
major
3'SS Sequence:
TTTCATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCACATTGACT
Flanking Amino Acid:
TELPKPTTTTNSTEENNLHR
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
66
39.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
89.3
0.88
0.7
84.5
30
Minor 5ss
32.7
-2
3.3
40.2
39.6
Minor BPS
64.4
0.53
1.7
81.5
39.9

Associated Gene:

Gene:
PTPRE
Ensembl Gene ID:
ENSAPLG00000009861
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039336
34410713 - 34502285
91573
ENSAPLT00000031642
34410713 - 34502285
91573
ENSAPLT00000021567
34454363 - 34502285
47923