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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34474894_34475172_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34474894 - 34475172
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTATTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
GTGTATTTAAAG
Flanking Amino Acid:
IFILLAGYFFRFRRHRKAVV
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.9
44.2
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
68.6
0.42
1.1
67.7
41.9
Minor 5ss
36.8
-1.5
3.2
49.6
46.6
Minor BPS
53.9
-0
1.7
58.41
43

Associated Gene:

Gene:
PTPRE
Ensembl Gene ID:
ENSAPLG00000009861
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021567
34454363 - 34502285
47923
ENSAPLT00000039336
34410713 - 34502285
91573
ENSAPLT00000031642
34410713 - 34502285
91573