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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34475093_34475172_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34475093 - 34475172
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTGGTAAA
5'SS Class:
major
3'SS Sequence:
TGTGTATTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
GTGTATTTAAAG
Flanking Amino Acid:
MNRNSFSRLTWFRRHRKAVV
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
68
38.5
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
68.6
0.42
1.1
67.7
41.9
Minor 5ss
30.1
-2.3
2.7
31.1
36.5
Minor BPS
53.9
-0
1.7
58.41
43

Associated Gene:

Gene:
PTPRE
Ensembl Gene ID:
ENSAPLG00000009861
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010307
34474953 - 34502285
27333