About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34476784_34481052_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34476784 - 34481052
Intron Length:
4269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATAACA
Flanking Amino Acid:
EGKLFREEFNSLTPGYVQGT
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
80
34.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.8
0.87
0.7
84.2
30.7
Minor 5ss
38.3
-1.3
3.1
54.8
42.5
Minor BPS
66.5
0.51
1.5
77.05
33.3

Associated Gene:

Gene:
PTPRE
Ensembl Gene ID:
ENSAPLG00000009861
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010307
34474953 - 34502285
27333
ENSAPLT00000039336
34410713 - 34502285
91573
ENSAPLT00000031642
34410713 - 34502285
91573
ENSAPLT00000021567
34454363 - 34502285
47923