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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34481144_34481895_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34481144 - 34481895
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGACAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GTGCTTGTAATG
Flanking Amino Acid:
EKNRYPNILPYDHSRVILSQ
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.7
36.9
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
36.1
-1.6
3.3
53
43.9
Minor BPS
45
-0.5
2
48.32
40.1

Associated Gene:

Gene:
PTPRE
Ensembl Gene ID:
ENSAPLG00000009861
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010307
34474953 - 34502285
27333
ENSAPLT00000039336
34410713 - 34502285
91573
ENSAPLT00000031642
34410713 - 34502285
91573
ENSAPLT00000021567
34454363 - 34502285
47923