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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34482137_34482620_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34482137 - 34482620
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAG
U12 Branch Point Sequence:
ATCTGTTGAGCA
Flanking Amino Acid:
KEKNKFIAAQGPKQETVNDF
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
57.3
0.18
1.6
57.1
49.4
Major PPT
74.5
0.55
1
68.8
41.9
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
45.5
-0.3
2
58.19
41.7

Associated Gene:

Gene:
PTPRE
Ensembl Gene ID:
ENSAPLG00000009861
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010307
34474953 - 34502285
27333
ENSAPLT00000039336
34410713 - 34502285
91573
ENSAPLT00000031642
34410713 - 34502285
91573
ENSAPLT00000021567
34454363 - 34502285
47923