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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34482719_34484248_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34482719 - 34484248
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTACAAA
U12 Branch Point Sequence:
GCGTTACAAACT
Flanking Amino Acid:
MLTNLKERKEEKCYQYWPDQ
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
56
0.15
1.3
65.4
38
Major PPT
77.6
0.62
1
72.2
42.7
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
42.2
-0.5
2.1
57.85
44.8

Associated Gene:

Gene:
PTPRE
Ensembl Gene ID:
ENSAPLG00000009861
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039336
34410713 - 34502285
91573
ENSAPLT00000031642
34410713 - 34502285
91573
ENSAPLT00000021567
34454363 - 34502285
47923
ENSAPLT00000010307
34474953 - 34502285
27333