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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34488967_34491117_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34488967 - 34491117
Intron Length:
2151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTACAGATAATC
Flanking Amino Acid:
VKIGLEEEFKKLTNVRIMKE
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.7
0.83
0.8
81.8
34.6
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
43.2
-0.5
2.3
58.98
39.6

Associated Gene:

Gene:
PTPRE
Ensembl Gene ID:
ENSAPLG00000009861
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010307
34474953 - 34502285
27333
ENSAPLT00000039336
34410713 - 34502285
91573
ENSAPLT00000031642
34410713 - 34502285
91573
ENSAPLT00000021567
34454363 - 34502285
47923