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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34492104_34492708_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34492104 - 34492708
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAC
U12 Branch Point Sequence:
GTGTCATTACAC
Flanking Amino Acid:
TDYINASFIDGYRQKDYFIA
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
64
0.35
1
72.7
31.8
Major PPT
89.5
0.89
0.6
84.8
22.8
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
48.6
-0.1
2
61.77
43

Associated Gene:

Gene:
PTPRE
Ensembl Gene ID:
ENSAPLG00000009861
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021567
34454363 - 34502285
47923
ENSAPLT00000010307
34474953 - 34502285
27333
ENSAPLT00000039336
34410713 - 34502285
91573
ENSAPLT00000031642
34410713 - 34502285
91573