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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34493765_34494979_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
34493765 - 34494979
Intron Length:
1215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCACGCACGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
GCTGGATGAATC
Flanking Amino Acid:
VRDFIVTYNQGNHEKQSRLV
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
53.9
0.09
0.9
47.1
35.6
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
41.4
-0.6
2
48.75
41.5

Associated Gene:

Gene:
PTPRE
Ensembl Gene ID:
ENSAPLG00000009861
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039336
34410713 - 34502285
91573
ENSAPLT00000031642
34410713 - 34502285
91573
ENSAPLT00000021567
34454363 - 34502285
47923
ENSAPLT00000010307
34474953 - 34502285
27333