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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34495141_34499156_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34495141 - 34499156
Intron Length:
4016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGCATGCCAACC
Flanking Amino Acid:
TGNHPITVHCSAGAGRTGTF
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.7
0.67
0.9
73.2
37.1
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
38.1
-0.9
2.3
48.42
41.2

Associated Gene:

Gene:
PTPRE
Ensembl Gene ID:
ENSAPLG00000009861
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031642
34410713 - 34502285
91573
ENSAPLT00000021567
34454363 - 34502285
47923
ENSAPLT00000010307
34474953 - 34502285
27333
ENSAPLT00000039336
34410713 - 34502285
91573