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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34499293_34501084_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34499293 - 34501084
Intron Length:
1792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGATAT
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTTTTGATATCT
Flanking Amino Acid:
LQRPHMVQTLEQYEFCYRVV
Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.1
33.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
45.8
-0.4
2.9
61.2
44.7
Minor BPS
45.8
-0.2
2.4
73.15
43.6

Associated Gene:

Gene:
PTPRE
Ensembl Gene ID:
ENSAPLG00000009861
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039336
34410713 - 34502285
91573
ENSAPLT00000031642
34410713 - 34502285
91573
ENSAPLT00000021567
34454363 - 34502285
47923
ENSAPLT00000010307
34474953 - 34502285
27333