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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34562318_34563623_F

Intron Information:

Intron Rank:
143319
Intron Class:
major
Intron Phase:
Intron Coordinates:
34562318 - 34563623
Intron Length:
1306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTCCCTCGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
72.4
0.5
0.9
69.5
31.3
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
64.9
0.46
1.5
76.45
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027203
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040274
34561627 - 34564080
2454