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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34602150_34624025_F

Intron Information:

Intron Rank:
125410
Intron Class:
major
Intron Phase:
Intron Coordinates:
34602150 - 34624025
Intron Length:
21876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ACATCTCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTATTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
82.1
25.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.4
0.62
0.9
73.8
36
Minor 5ss
38.8
-1.3
3
53.7
43.8
Minor BPS
60.4
0.32
1.8
75.15
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017573
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047155
34595700 - 34624494
28795
ENSAPLT00000028732
34592876 - 34624494
31619