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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34639258_34686624_F

Intron Information:

Intron Rank:
131614
Intron Class:
major
Intron Phase:
Intron Coordinates:
34639258 - 34686624
Intron Length:
47367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGATGT
5'SS Class:
major
3'SS Sequence:
GTTGTCTATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTCTCTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
66.2
40.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.8
0.51
0.9
70.8
40.2
Minor 5ss
40.9
-1
3.1
53
44.8
Minor BPS
63.7
0.43
1.7
72.69
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020644
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043934
34638675 - 34687218
48544