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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34657390_34664924_F

Intron Information:

Intron Rank:
131611
Intron Class:
major
Intron Phase:
Intron Coordinates:
34657390 - 34664924
Intron Length:
7535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATC
5'SS Class:
strong_major
3'SS Sequence:
TGACCTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
AATCTCTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
80.7
31.7
Major BPS
77.7
0.69
1
81
30.2
Major PPT
68.8
0.42
1
65.8
40.7
Minor 5ss
44.1
-0.6
2.8
60.5
44.2
Minor BPS
50.6
0.1
1.7
69.94
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020644
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022560
34636160 - 34665391
29232