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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34742796_34747997_F

Intron Information:

Intron Rank:
125095
Intron Class:
major
Intron Phase:
Intron Coordinates:
34742796 - 34747997
Intron Length:
5202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CCATCCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTCCATCCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76
0.59
0.8
69.2
31.1
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
46.3
-0.3
2.2
65.51
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017367
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032358
34742492 - 34749381
6890