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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34750029_34752349_F

Intron Information:

Intron Rank:
125094
Intron Class:
major
Intron Phase:
Intron Coordinates:
34750029 - 34752349
Intron Length:
2321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACGT
5'SS Class:
major
3'SS Sequence:
TGGCTTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATCAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
62.5
43.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
72
0.5
1
66.3
39.8
Minor 5ss
26.8
-2.7
3.3
38.8
46.3
Minor BPS
49.7
0.06
2
74.83
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017367
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031997
34749341 - 34753316
3976