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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34757842_34758139_F

Intron Information:

Intron Rank:
137175
Intron Class:
major
Intron Phase:
Intron Coordinates:
34757842 - 34758139
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGATAT
5'SS Class:
major
3'SS Sequence:
TCTCTTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTTCTAAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
73.2
31.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
70.5
0.46
1
66.9
37.2
Minor 5ss
47.4
-0.3
2.9
64.7
41.1
Minor BPS
65.8
0.48
1.6
74.33
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023884
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044523
34757660 - 34769687
12028