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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34759789_34769475_F

Intron Information:

Intron Rank:
137173
Intron Class:
major
Intron Phase:
Intron Coordinates:
34759789 - 34769475
Intron Length:
9687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
73.8
42.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.1
0.88
0.7
88.5
28.2
Minor 5ss
36.4
-1.5
3.3
49.5
46.5
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023884
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044523
34757660 - 34769687
12028
ENSAPLT00000029168
34757660 - 34769687
12028