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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34834022_34838605_F

Intron Information:

Intron Rank:
140180
Intron Class:
major
Intron Phase:
Intron Coordinates:
34834022 - 34838605
Intron Length:
4584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGAGA
5'SS Class:
major
3'SS Sequence:
TTTCTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTGTCCTTAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.7
41.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87
0.83
0.7
81.8
28.4
Minor 5ss
24.8
-2.9
3.1
30.4
43
Minor BPS
69.8
0.6
1.7
73.81
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025392
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034157
34833830 - 34842508
8679