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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34838234_34838605_F

Intron Information:

Intron Rank:
140183
Intron Class:
major
Intron Phase:
Intron Coordinates:
34838234 - 34838605
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATGTCT
5'SS Class:
major
3'SS Sequence:
TTTCTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTGTCCTTAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
67.7
37.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87
0.83
0.7
81.8
28.4
Minor 5ss
39.6
-1.2
3.3
54
45.1
Minor BPS
69.8
0.6
1.7
73.81
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025392
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039618
34837938 - 34842508
4571