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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34851710_34852495_R

Intron Information:

Intron Rank:
144841
Intron Class:
major
Intron Phase:
Intron Coordinates:
34851710 - 34852495
Intron Length:
786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
AATACACAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
76.5
32.9
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
42.3
-0.8
2.9
56.2
43.3
Minor BPS
40.9
-0.6
2.1
60.34
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025318
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041559
34850831 - 34853009
2179