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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34906869_34911521_R

Intron Information:

Intron Rank:
139901
Intron Class:
major
Intron Phase:
Intron Coordinates:
34906869 - 34911521
Intron Length:
4653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGAGTT
5'SS Class:
strong_major
3'SS Sequence:
GATCTTCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AGAAAATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
76.8
31.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.8
0.6
0.9
69.4
36.6
Minor 5ss
37
-1.5
3.5
55.2
49
Minor BPS
47.2
-0.2
1.7
55.17
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022672
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031332
34906093 - 34920112
14020