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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34911751_34916348_R

Intron Information:

Intron Rank:
139898
Intron Class:
major
Intron Phase:
Intron Coordinates:
34911751 - 34916348
Intron Length:
4598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84.8
0.78
0.7
77.9
36.6
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022672
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021672
34910264 - 34916828
6565