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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34911751_34919102_R

Intron Information:

Intron Rank:
139900
Intron Class:
major
Intron Phase:
Intron Coordinates:
34911751 - 34919102
Intron Length:
7352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGCGGG
5'SS Class:
major
3'SS Sequence:
TTTGTTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
58.2
46.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84.8
0.78
0.7
77.9
36.6
Minor 5ss
34.7
-1.7
3.5
46.9
48.5
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022672
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025160
34910264 - 34920112
9849
ENSAPLT00000031332
34906093 - 34920112
14020