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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34916435_34916559_R

Intron Information:

Intron Rank:
139899
Intron Class:
major
Intron Phase:
Intron Coordinates:
34916435 - 34916559
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.8
38.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022672
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033941
34916370 - 34920112
3743
ENSAPLT00000021672
34910264 - 34916828
6565