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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34916737_34919102_R

Intron Information:

Intron Rank:
139904
Intron Class:
major
Intron Phase:
Intron Coordinates:
34916737 - 34919102
Intron Length:
2366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGCGGG
5'SS Class:
major
3'SS Sequence:
TCTGTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
TTTTCTGTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
58.2
46.8
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
82.9
0.74
0.9
76.4
36.7
Minor 5ss
34.7
-1.7
3.5
46.9
48.5
Minor BPS
56.4
0.28
2.2
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022672
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033941
34916370 - 34920112
3743