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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_34975005_34975330_F

Intron Information:

Intron Rank:
146570
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
34975005 - 34975330
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTTGTGG
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGGAA
U12 Branch Point Sequence:
CCTTCGTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.17
1.2
48
42.8
Major BPS
62.2
0.3
1.4
63.4
44.3
Major PPT
82.4
0.73
0.8
77.1
31.6
Minor 5ss
38.6
-1.3
3
48.2
47.4
Minor BPS
48.5
-0
2.3
69.82
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028970
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025793
34974894 - 34995964
21071