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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35055593_35065998_R

Intron Information:

Intron Rank:
131736
Intron Class:
major
Intron Phase:
Intron Coordinates:
35055593 - 35065998
Intron Length:
10406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTGTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTGTCTCCATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
81.1
0.7
0.8
79.6
32.4
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
43.5
-0.5
2
54.8
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018071
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039819
35055389 - 35067250
11862