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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35062270_35065998_R

Intron Information:

Intron Rank:
131738
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
35062270 - 35065998
Intron Length:
3729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTGCCAAACTAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCTTGTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
49.2
-0
1.1
50.4
36.4
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
51.3
0.12
2.2
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018071
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042084
35061818 - 35067250
5433