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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3515483_3516462_R

Intron Information:

Intron Rank:
134508
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
3515483 - 3516462
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CCATCTCCAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TCCTTCTGACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
56
0.14
1.1
56.8
32.3
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
50.5
0.09
1.7
67.49
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019670
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048165
3514875 - 3517678
2804
ENSAPLT00000044741
3514875 - 3516758
1884