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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35167024_35168736_F

Intron Information:

Intron Rank:
138757
Intron Class:
major
Intron Phase:
Intron Coordinates:
35167024 - 35168736
Intron Length:
1713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TCTCCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
70.9
36.4
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
79.4
0.66
0.9
76
37.8
Minor 5ss
24.6
-2.9
3
28.8
43.6
Minor BPS
67.7
0.64
1.6
81.55
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024743
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046275
35166551 - 35169553
3003