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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35184481_35185990_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35184481 - 35185990
Intron Length:
1510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGCGGG
5'SS Class:
major
3'SS Sequence:
TGTTTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAAAC
Flanking Amino Acid:
PPPPPPSPCGRSVPHLDNST
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
54.2
45
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.9
0.61
1
74.1
39.5
Minor 5ss
29.2
-2.4
3.4
37.8
47
Minor BPS
69.6
0.59
1.3
74.76
36

Associated Gene:

Gene:
MGMT
Ensembl Gene ID:
ENSAPLG00000030688
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035777
35184155 - 35346394
162240
ENSAPLT00000036657
35184155 - 35346296
162142