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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35189416_35194398_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35189416 - 35194398
Intron Length:
4983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGTCAAT
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTTACAG
Flanking Amino Acid:
EIEFQDKQGQIEIFHLAWHR
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.1
66.8
40.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.4
0.98
0.6
88.4
21.4
Minor 5ss
34.3
-1.8
3.2
47.9
47.8
Minor BPS
68.9
0.46
1.8
76.73
40.6

Associated Gene:

Gene:
MGMT
Ensembl Gene ID:
ENSAPLG00000030688
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039986
35189194 - 35346394
157201