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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35194443_35208011_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35194443 - 35208011
Intron Length:
13569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGAACA
Flanking Amino Acid:
MASRRVPKVTSKEGASQC
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77
0.61
1
74.2
39.4
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
66.5
0.51
1.7
81.43
33.1

Associated Gene:

Gene:
MGMT
Ensembl Gene ID:
ENSAPLG00000030688
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044391
35192778 - 35346394
153617
ENSAPLT00000036657
35184155 - 35346296
162142
ENSAPLT00000035777
35184155 - 35346394
162240
ENSAPLT00000022464
35194399 - 35331440
137042