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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35208152_35313093_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35208152 - 35313093
Intron Length:
104942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTATAATTAATA
Flanking Amino Acid:
KLPKMSVLPNGAEASAGCEV
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.7
33.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
77.8
0.63
0.8
72.5
32.2
Minor 5ss
40
-1.1
2.7
42.4
44.3
Minor BPS
62.3
0.38
1.8
74.87
36

Associated Gene:

Gene:
MGMT
Ensembl Gene ID:
ENSAPLG00000030688
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044391
35192778 - 35346394
153617
ENSAPLT00000036657
35184155 - 35346296
162142
ENSAPLT00000035777
35184155 - 35346394
162240
ENSAPLT00000022464
35194399 - 35331440
137042