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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_35313252_35338676_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35313252 - 35338676
Intron Length:
25425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TGCATATGAACA
Flanking Amino Acid:
PPFHHPLLQQDSFTKQVLWT
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.2
76.7
33.6
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
88.7
0.87
0.7
84
31
Minor 5ss
29.4
-2.4
2.9
36.5
40.5
Minor BPS
47.9
-0.1
1.7
58.89
40.2

Associated Gene:

Gene:
MGMT
Ensembl Gene ID:
ENSAPLG00000030688
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039986
35189194 - 35346394
157201
ENSAPLT00000036657
35184155 - 35346296
162142
ENSAPLT00000035777
35184155 - 35346394
162240
ENSAPLT00000044391
35192778 - 35346394
153617